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When you are ready to do more with your expression data, then use CodeLinker, the latest member of the Gene Codes product line.
Parallelize your analyses - use several different sets of settings and run on the same sequence or even different sequences at the same time without writing scripts.
SLAM is a form of association mining which searches for associations in your gene expression data. It detects associations which occur together at a rate greater than by chance.
It has different alignment modes which allow you to work with data that may contain different SNPs, methylated bases, or RNA-I bases compared to the reference sequence.
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